Jaguar
Schrodinger, Inc. is shipping version 3.0 of its electronic
structure software package, Jaguar (formerly known as PS-GVB).
Jaguar 3.0 includes a number of performance enhancements, with
especially large speedups for Density Functional Theory, and a new
theoretical method, GVB-LMP2.
Supported platforms include SGI, DEC, HP, PC (Linux), IBM, and Cray.
New features in Jaguar 3.5 include:
- Property prediction automation
- Easy scripting language for setting up complex computational
experiments
- Report-making utility for extracting data from output files
- DFT analytic frequencies
- GVB and DFT IR intensities
- SQM method for empirical scaling of vibrational frequencies
- Solvation simulations for multiple fragments
- Potential energy surface scans
- Calculations can be done for a range of geometries, specified by
one or more bonded or nonbonded internal coordinates, i.e.,
bond lengths, bond angles, torsional angles
- Full suite of transition state searching capabilities
- Search algorithms use geometries of reactant and product, and/or
initial guess for the transition state
- Jaguar GUI visualizes reactant, product and transition state
geometries
- Job management
- Jaguar GUI handles single or batch jobs
- Advanced schemes for fitting ESP charges
- Local MP2 easier to use
- Automatic delocalization for transition states
- Automatic delocalization for aromatic ring systems
- Direct interface to MOPAC
- MOPAC can be run directly from Jaguar, resultant geometries and
Hessians are passed into Jaguar
- Additional basis sets
- Molecular weights and stoichiometry
Accuracy and performance improvements in Jaguar 3.5 include:
- Improved initial guess wavefunctions for systems containing
transition metals
- SCF converges more quickly
- More likely to converge to correct ground state
- Improved parameters for solvation
- Fast multipole methods for large-scale DFT calculations
- Faster open shell calculations
- Faster SCF energy iterations for transition metal systems
- Improved SCF convergence algorithms
- Vibrational spectra for the entire system or selected portions
- Geometry optimization algorithms
- Improved algorithms for constrained optimization
- Redundant internal coordinates used for all optimizations
- Improved initial Hessians including non-bond and H bond terms
- Installed program requires 50% less disk space
Jaguar 3.5 is Year 2000 Ready.
Jaguar will operate free from date (including leap
year) errors resulting from the rollover from 1999 to 2000, and this
date change will not affect Jaguar's performance or
functionality.
Jaguar 4.1
Jaguar 4.1, the latest
version of the high-performance ab initio quantum chemistry package. The new
release of Jaguar introduces new features and includes improvements in
performance over previous versions. In addition, this version of Jaguar ships
with
Maestro 3.0, the latest release of Schrodinger's unified graphical user
interface. Among other new features, the combined Jaguar and Maestro package
contains the following new features:
- Allows molecular structure building and cleanup with a Universal Force Field,
- TIFF and JPEG image production,
- Interoperability with Schrodinger's MacroModel and Impact,
- Parallel support on the SUN, SGI, HP and IBM platforms.
Jaguar and Maestro run on all common hardware platforms, including SGI, IBM,
HP, Compaq, Sun and Linux.
Jaguar 4.1 now runs in
parallel on all supported platforms for both shared-memory
architectures and distributed clusters.
Schrodinger has always sought to give Jaguar the best available
performance for ab initio quantum chemistry. Over the past year,
Schrodinger has worked closely with hardware vendors to improve that
performance with the implementation of efficient parallel algorithms.
Parallel Jaguar is now available for:
- SGI IRIX,
- IBM AIX,
- HP-UX,
- Compaq Tru64,
- SunOS, and
- Intel-compatible Linux PCs.
Parallel Jaguar requires Message Passing Interface (MPI, or MPICH for
Linux) in order to run. Jaguar will run on:
- shared-memory architectures in symmetric multiprocessing (SMP)
mode, or
- distributed nodes and clusters, such as IBM SP2 or Beowulf.
In addition to the new parallel platforms, Jaguar 4.1 is integrated
with the Maestro interface, which makes it convenient to build and
modify structures. The addition of the Universal Force Field (UFF)
makes it easy to clean up built or imported structures before
submitting them to Jaguar. The Maestro interface also makes it easier
to integrate your research projects between Jaguar and other
Schrodinger products. For instance, one can use MacroModel's
conformational searching capability and send the resulting low-energy
conformers to Jaguar for fast and efficient geometry optimization.
Also, all SchrĘdinger products now run from a single, top-level
directory, streamlining systems management.
info@schrodinger.com
http://www.schrodinger.com/jaguar2.html