Journal of Molecular Graphics & Modelling
A major change in the Journal of Molecular Graphics &
Modelling (JMGM) will be of interest to computational chemists.
For years JMGM has been associated with the Molecular
Graphics and Modelling Society and has had a somewhat
narrow focus. Now, however, the journal is officially
co-associated with the Computers in Chemistry (COMP) division
of the American Chemical Society. The 2200 members of COMP
have a wide range of interests in computational chemistry.
COMP members are eligible for a special subscription rate.
A new editorial direction has been set, and a new
international editorial board has been appointed. JMGM offers
advantages of free color figures, quick publication time, and
both hard copy and online versions.
The scope of the new JMGM encompasses:
- molecular interactions
- protein and polymer engineering
- pharmaceutical design
- materials design
- applied theoretical chemistry
- structure-property relationships
- computer library design
High quality papers describing work at the cutting edge of
science are welcome. Instructions to authors are given at
http://www.elsevier.nl/locate/jmgm/
Advances in Combinatorial Library Design
The latest issue of the
Journal of Molecular Graphics & Modelling (Vol. 18, No. 4/5):
it is a special issue on "Advances in Combinatorial Library
Design" organized by Dr. Dimitris Agrafiotis (3-Dimensional
Pharmaceuticals) and Dr. Eric Martin (Chiron). The articles are:
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Robert P. Sheridan, Sonia G. SanFeliciano, and Simon K. Kearsley
Designing targeted libraries with genetic algorithms.
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Paul Beroza, Erin K. Bradley, John E. Eksterowicz, Robert
Feinstein, Jonathan Greene, Peter D. J. Grootenhuis, Randall M.
Henne, John Mount, William A. Shirley, Andrew Smellie, Robert
V. Stanton, and David C. Spellmeyer
Applications of random
sampling to virtual screening of combinatorial libraries.
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Sarah J. Edgar, John D. Holliday and Peter Willett
Effectiveness of
retrieval in similarity searches of chemical databases: A review
of performance measures.
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Andrew R. Leach, Richard A. Bryce, and Alan J. Robinson
The synergy between combinatorial chemistry and de novo design.
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Dmitrii N. Rassokhin and Dimitris K. Agrafiotis
The Kolmogorov-Smirnov statistic and its applications in library design.
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Eric J. Martin and Thomas J. Hoeffel
Oriented substituent
pharmacophores PRopErtY Space (OSPPREYS): A substituent-
based calculation that describes the library products better than
the corresponding product-based calculation.
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Robert D. Clark, David E. Patterson, Farhad Soltanshahi, James F.
Blake, and James B. Matthew
Visualizing substructural fingerprints.
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Marvin Waldman, Hong Li, and Moises Hassan
Novel algorithms for the optimization of molecular diversity of combinatorial
libraries.
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Robert D. Brown, Moises Hassan, and Marvin Waldman
Combinatorial library design for diversity, cost efficiency and
drug-like character.
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Jonathan S. Mason and Brett R. Beno
Library design using BCUT
chemistry-space descriptors and multiple 4-point
pharmacophore fingerprints - simultaneous optimization and
structure-based diversity.
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John M. Barnard, Geoff M. Downs, Annette von Scholley-Pfab, and
Robert D. Brown
Use of Markush structure analysis techniques
for SMILES and fingerprint generation and clustering large
combinatorial libraries.
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Paul Labute
A widely applicable set of descriptors.
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Shenghua Shi, Zhengwei Peng, Jaroslaw Kostrowicki, Genevieve
Paderes, Atsuo Kuki
Efficient combinatorial filtering for desired
molecular properties of reaction products.
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Michael S. Siani, A. Geoffrey Skillman, Christopher W. Carreras,
Gary Ashley, Irwin D. Kuntz, and Daniel V. Santi
Development and screening of a polyketide virtual library for drug leads
against a motilide pharmacophore.
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Tudor I. Oprea, Johan Gottfries, Vladamir Shcherbukhin, Peder
Svensson, and Thomas C. Kehler
Chemical information management in drug discovery: optimizing the computational
and combinatorial chemistry interfaces.
Online versions of the articles are at
http://www.chemweb.com/